this repo has no description
[new release] biotk (0.3)
CHANGES:
- does not depend on biocaml anymore
- modules Interval_tree, ISet, Bgzf, Sam, Phred_score, Solexafrom, Bamstats
imported from biocaml
- new modules: Meme, Alphabet, Amino_acid, Ibed
- many small enhancement in croquis
- compatible with core v0.16.0
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packages/biotk/biotk.0.3/opam
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packages/biotk/biotk.0.3/opam
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opam-version: "2.0"
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synopsis: "Bioinformatics toolkit"
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description: """
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biotk implements various functionalities in
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computational biology, like parsers/unparsers for some file
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formats, a few basic data structures and sequence algorithms, as
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well as access to some databases."""
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maintainer: ["philippe.veber@gmail.com"]
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authors: ["Philippe Veber"]
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license: "CeCILL-C"
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homepage: "https://github.com/pveber/biotk/"
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bug-reports: "https://github.com/pveber/biotk/issues"
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depends: [
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"dune" {>= "3.6"}
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"angstrom" {>= "0.15.0"}
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"angstrom-unix" {>= "0.15.0"}
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"binning"
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"camlzip" {>= "1.05"}
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"core" {>= "v0.16.0"}
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"core_bench" {with-test}
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"core_unix" {>= "v0.16.0"}
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"crunch" {>= "3.2.0"}
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"fmt"
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"gsl"
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"ocaml" {>= "4.13.0"}
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"otfm"
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"ppx_csv_conv"
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"ppx_deriving"
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"result" {>= "1.5"}
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"rresult" {>= "0.6.0"}
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"uri" {>= "4.2.0"}
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"vg"
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"tyxml" {>= "4.4.0"}
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"zlib" {>= "0.6"}
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"odoc" {with-doc}
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]
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build: [
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["dune" "subst"] {dev}
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[
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"dune"
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"build"
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"-p"
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name
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"-j"
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jobs
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"@install"
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"@runtest" {with-test}
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"@doc" {with-doc}
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]
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]
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dev-repo: "git+https://github.com/pveber/biotk.git"
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available: arch != "arm32" & arch != "x86_32"
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url {
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src: "https://github.com/pveber/biotk/releases/download/v0.3/biotk-0.3.tbz"
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checksum: [
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"sha256=f5e45ddea62d794c6eff134450447f0c7a1dafa7130ae3ed48aaf7f31df68228"
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"sha512=9181202293866e8ef8bc4bc973c0da3fef915d04bfb214b0e98522e979311868dccc8633e651de24ae8c257833ce021001cfae19036c1a5260eeaae27c26e49b"
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]
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}
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x-commit-hash: "4b35d9688c7efce357383ed19442c9ff0f97c082"