fix: phoenix ingest now shows diff before overwriting stored clauses
Root cause: user runs ingest then diff, but ingest overwrites the
stored clause index — so diff compares new vs new and shows no changes.
Fix: cmdIngest now diffs stored vs file BEFORE ingesting. Shows which
clauses were added/removed/modified, and guides user to run canonicalize
then regen. The user no longer needs a separate diff step.
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