Rewrite gc command for current architecture
- Reads referenced layers from build.jsonl (not old layers JSON)
- Run dirs are now subdirectories, not flat files
- Reports orphaned build layers (--delete-orphans to remove)
- Shows odoc store universe count
- Cleans stale temp dirs, old solutions, old run dirs
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>