this repo has no description
remove typst from care (#3457)
* remove typst
* remove typst from docker
* remove typst from settings files
authored by
Prafful Sharma
and committed by
GitHub
a8f1efcb
01ec20df
+1
-845
-4
.env.example
-4
.env.example
···
400
400
# Default: "http://165.22.211.144/fhir"
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# SNOWSTORM_DEPLOYMENT_URL=http://165.22.211.144/fhir
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403
-
# Path to typst binary for document generation (string)
404
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# Default: "typst"
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-
# TYPST_BIN=typst
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-
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# ============================================================================
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# BUSINESS LOGIC / EMR CONFIGURATION
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# ============================================================================
-3
.vscode/settings.json
-3
.vscode/settings.json
-55
care/emr/api/viewsets/encounter.py
-55
care/emr/api/viewsets/encounter.py
···
1
-
import tempfile
2
1
from datetime import timedelta
3
2
4
3
from django.conf import settings
5
4
from django.db import transaction
6
-
from django.http import HttpResponse
7
-
from django.utils import timezone
8
5
from django_filters import rest_framework as filters
9
6
from drf_spectacular.utils import extend_schema
10
7
from pydantic import UUID4, BaseModel
···
30
27
Patient,
31
28
)
32
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from care.emr.models.patient import PatientIdentifier, PatientIdentifierConfig
33
-
from care.emr.reports import discharge_summary
34
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from care.emr.resources.encounter.constants import COMPLETED_CHOICES, StatusChoices
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from care.emr.resources.encounter.spec import (
36
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EncounterCareTeamMemberWriteSpec,
···
46
42
)
47
43
from care.emr.resources.tag.config_spec import TagResource
48
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from care.emr.tagging.filters import SingleFacilityTagFilter
49
-
from care.emr.tasks.discharge_summary import generate_discharge_summary_task
50
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from care.facility.models import Facility
51
46
from care.security.authorization import AuthorizationController
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47
from care.users.models import User
···
313
308
).delete()
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return Response({})
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-
@extend_schema(
317
-
description="Generate a discharge summary",
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responses={
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-
200: "Success",
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},
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tags=["encounter"],
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-
)
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@action(detail=True, methods=["POST"])
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def generate_discharge_summary(self, request, *args, **kwargs):
325
-
encounter = self.get_object()
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if not AuthorizationController.call(
327
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"can_view_clinical_data", self.request.user, encounter.patient
328
-
):
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raise PermissionDenied("Permission denied to user")
330
-
encounter_ext_id = encounter.external_id
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-
if current_progress := discharge_summary.get_progress(encounter_ext_id):
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-
return Response(
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-
{
334
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"detail": (
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"Discharge Summary is already being generated, "
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f"current progress {current_progress}%"
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-
)
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},
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status=status.HTTP_409_CONFLICT,
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-
)
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discharge_summary.set_lock(encounter_ext_id, 1)
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generate_discharge_summary_task.delay(encounter_ext_id)
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-
return Response(
344
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{"detail": "Discharge Summary will be generated shortly"},
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status=status.HTTP_202_ACCEPTED,
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-
)
347
-
348
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class EncounterFacilityIdentifierWriteSpec(BaseModel):
349
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identifier: UUID4
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value: str | None = None
···
427
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encounter.care_team = members
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encounter.save(update_fields=["care_team"])
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return Response({}, status=status.HTTP_200_OK)
430
-
431
-
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-
def dev_preview_discharge_summary(request, encounter_id):
433
-
"""
434
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This is a dev only view to preview the discharge summary template
435
-
"""
436
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encounter = get_object_or_404(Encounter, external_id=encounter_id)
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data = discharge_summary.get_discharge_summary_data(encounter)
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data["date"] = timezone.now()
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-
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with tempfile.NamedTemporaryFile(delete=False, suffix=".pdf") as tmp_file:
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discharge_summary.generate_discharge_summary_pdf(data, tmp_file)
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tmp_file.seek(0)
443
-
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response = HttpResponse(tmp_file, content_type="application/pdf")
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response["Content-Disposition"] = 'inline; filename="discharge_summary.pdf"'
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-
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return response
-266
care/emr/reports/discharge_summary.py
-266
care/emr/reports/discharge_summary.py
···
1
-
import html
2
-
import logging
3
-
import subprocess
4
-
import tempfile
5
-
import time
6
-
from pathlib import Path
7
-
from uuid import uuid4
8
-
9
-
from django.conf import settings
10
-
from django.core.cache import cache
11
-
from django.template.loader import render_to_string
12
-
from django.utils import timezone
13
-
14
-
from care.emr.models import (
15
-
AllergyIntolerance,
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Condition,
17
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Encounter,
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FileUpload,
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Observation,
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medication_request,
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)
22
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from care.emr.resources.allergy_intolerance.spec import (
23
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VerificationStatusChoices as AllergyVerificationStatusChoices,
24
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)
25
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from care.emr.resources.condition.spec import CategoryChoices, VerificationStatusChoices
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from care.emr.resources.file_upload.spec import FileCategoryChoices, FileTypeChoices
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from care.emr.resources.medication.request.spec import MedicationRequestStatus
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-
from care.users.models import User
29
-
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logger = logging.getLogger(__name__)
31
-
32
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LOCK_DURATION = 2 * 60 # 2 minutes
33
-
34
-
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def lock_key(encounter_ext_id: str):
36
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return f"discharge_summary_{encounter_ext_id}"
37
-
38
-
39
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def set_lock(encounter_ext_id: str, progress: int):
40
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cache.set(lock_key(encounter_ext_id), progress, timeout=LOCK_DURATION)
41
-
42
-
43
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def get_progress(encounter_ext_id: str):
44
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return cache.get(lock_key(encounter_ext_id))
45
-
46
-
47
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def clear_lock(encounter_ext_id: str):
48
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cache.delete(lock_key(encounter_ext_id))
49
-
50
-
51
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def parse_iso_datetime(date_str):
52
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try:
53
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return timezone.datetime.fromisoformat(date_str)
54
-
except ValueError:
55
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return None
56
-
57
-
58
-
def format_duration(duration):
59
-
if not duration:
60
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return ""
61
-
62
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if duration.days > 0:
63
-
return f"{duration.days} days"
64
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hours, remainder = divmod(duration.seconds, 3600)
65
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minutes, _ = divmod(remainder, 60)
66
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return f"{hours:02}:{minutes:02}"
67
-
68
-
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def get_discharge_summary_data(encounter: Encounter):
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logger.info("fetching discharge summary data for %s", encounter.external_id)
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symptoms = Condition.objects.filter(
72
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encounter=encounter,
73
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category=CategoryChoices.problem_list_item.value,
74
-
).exclude(verification_status=VerificationStatusChoices.entered_in_error)
75
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diagnoses = (
76
-
Condition.objects.filter(
77
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encounter=encounter,
78
-
category=CategoryChoices.encounter_diagnosis.value,
79
-
)
80
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.exclude(verification_status=VerificationStatusChoices.entered_in_error)
81
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.order_by("id")
82
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)
83
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principal_diagnosis = diagnoses[0] if diagnoses else None
84
-
85
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allergies = sorted(
86
-
AllergyIntolerance.objects.filter(encounter=encounter).exclude(
87
-
verification_status=AllergyVerificationStatusChoices.entered_in_error
88
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),
89
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key=lambda x: ("high", "low", "unable-to-assess", "", None).index(
90
-
x.criticality
91
-
),
92
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)
93
-
94
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observations = (
95
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Observation.objects.filter(
96
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encounter=encounter,
97
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)
98
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.select_related("data_entered_by")
99
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.order_by("id")
100
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)
101
-
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medication_requests = (
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medication_request.MedicationRequest.objects.filter(encounter=encounter)
104
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.exclude(status=MedicationRequestStatus.entered_in_error.value)
105
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.select_related("created_by")
106
-
)
107
-
108
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files = FileUpload.objects.filter(
109
-
associating_id=encounter.external_id,
110
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upload_completed=True,
111
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is_archived=False,
112
-
)
113
-
114
-
admission_duration = (
115
-
format_duration(
116
-
parse_iso_datetime(encounter.period.get("end"))
117
-
- parse_iso_datetime(encounter.period.get("start"))
118
-
)
119
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if encounter.period.get("end", None) and encounter.period.get("start", None)
120
-
else None
121
-
)
122
-
123
-
user_roles = {
124
-
member["user_id"]: member["role"]["display"] for member in encounter.care_team
125
-
}
126
-
127
-
care_team_users = User.objects.filter(id__in=user_roles.keys())
128
-
129
-
care_team_display = [
130
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f"{user.full_name} ({user_roles[user.id]})" for user in care_team_users
131
-
]
132
-
133
-
return {
134
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"encounter": encounter,
135
-
"admission_duration": admission_duration,
136
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"patient": encounter.patient,
137
-
"symptoms": symptoms,
138
-
"diagnoses": diagnoses,
139
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"principal_diagnosis": principal_diagnosis,
140
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"allergies": allergies,
141
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"observations": observations,
142
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"medication_requests": medication_requests,
143
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"files": files,
144
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"care_team": care_team_display,
145
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"discharge_summary_advice": encounter.discharge_summary_advice,
146
-
}
147
-
148
-
149
-
def compile_typ(output_file, data):
150
-
try:
151
-
logo_path = (
152
-
Path(settings.BASE_DIR)
153
-
/ "staticfiles"
154
-
/ "images"
155
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/ "logos"
156
-
/ "logo-light.svg"
157
-
)
158
-
159
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data["logo_path"] = "logo-light.svg"
160
-
with tempfile.TemporaryDirectory() as tmpdir:
161
-
template = Path(tmpdir) / "template.typ"
162
-
template.write_text(
163
-
html.unescape(
164
-
render_to_string(
165
-
"reports/patient_discharge_summary_pdf_template.typ",
166
-
context=data,
167
-
)
168
-
)
169
-
)
170
-
171
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logo_dest = Path(tmpdir) / "logo-light.svg"
172
-
logo_dest.write_text(logo_path.read_text())
173
-
174
-
subprocess.run( # noqa: S603
175
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[
176
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settings.TYPST_BIN,
177
-
"compile",
178
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str(template.name),
179
-
str(output_file),
180
-
],
181
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capture_output=True,
182
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check=True,
183
-
shell=False,
184
-
cwd=tmpdir,
185
-
)
186
-
187
-
logger.info(
188
-
"Successfully Compiled Summary pdf for %s", data["encounter"].external_id
189
-
)
190
-
191
-
except subprocess.CalledProcessError as e:
192
-
logger.error(
193
-
"Error compiling summary pdf for %s: %s",
194
-
data["encounter"].external_id,
195
-
e.stderr.decode("utf-8"),
196
-
)
197
-
raise e
198
-
199
-
200
-
def generate_discharge_summary_pdf(data, file):
201
-
logger.info(
202
-
"Generating Discharge Summary pdf for %s", data["encounter"].external_id
203
-
)
204
-
compile_typ(output_file=file.name, data=data)
205
-
logger.info(
206
-
"Successfully Generated Discharge Summary pdf for %s",
207
-
data["encounter"].external_id,
208
-
)
209
-
210
-
211
-
def generate_and_upload_discharge_summary(encounter: Encounter):
212
-
logger.info("Generating Discharge Summary for %s", encounter.external_id)
213
-
214
-
set_lock(encounter.external_id, 5)
215
-
try:
216
-
current_date = timezone.now()
217
-
timestamp = int(current_date.timestamp() * 1000)
218
-
patient_name_slug: str = (
219
-
encounter.patient.name.lower().strip().replace(" ", "_")
220
-
)
221
-
summary_file = FileUpload(
222
-
name=f"discharge_summary-{patient_name_slug}-{int(timestamp)}",
223
-
internal_name=f"{uuid4()}{int(time.time())}.pdf",
224
-
file_type=FileTypeChoices.encounter.value,
225
-
file_category=FileCategoryChoices.discharge_summary.value,
226
-
associating_id=encounter.external_id,
227
-
)
228
-
229
-
set_lock(encounter.external_id, 10)
230
-
data = get_discharge_summary_data(encounter)
231
-
data["date"] = current_date
232
-
233
-
set_lock(encounter.external_id, 50)
234
-
with tempfile.NamedTemporaryFile(suffix=".pdf") as file:
235
-
generate_discharge_summary_pdf(data, file)
236
-
logger.info("Uploading Discharge Summary for %s", encounter.external_id)
237
-
summary_file.files_manager.put_object(
238
-
summary_file, file, ContentType="application/pdf"
239
-
)
240
-
summary_file.upload_completed = True
241
-
summary_file.save(skip_internal_name=True)
242
-
logger.info(
243
-
"Uploaded Discharge Summary for %s, file id: %s",
244
-
encounter.external_id,
245
-
summary_file.id,
246
-
)
247
-
finally:
248
-
clear_lock(encounter.external_id)
249
-
250
-
return summary_file
251
-
252
-
253
-
def generate_discharge_report_signed_url(patient_external_id: str):
254
-
encounter = (
255
-
Encounter()
256
-
.objects.filter(patient__external_id=patient_external_id)
257
-
.order_by("-created_date")
258
-
.first()
259
-
)
260
-
if not encounter:
261
-
return None
262
-
263
-
summary_file = generate_and_upload_discharge_summary(encounter)
264
-
return summary_file.files_manager.signed_url(
265
-
summary_file, duration=2 * 24 * 60 * 60
266
-
)
-33
care/emr/tasks/discharge_summary.py
-33
care/emr/tasks/discharge_summary.py
···
1
-
from logging import Logger
2
-
3
-
from botocore.exceptions import ClientError
4
-
from celery import shared_task
5
-
from celery.utils.log import get_task_logger
6
-
7
-
from care.emr.models.encounter import Encounter
8
-
from care.emr.reports.discharge_summary import generate_and_upload_discharge_summary
9
-
from care.utils.exceptions import CeleryTaskError
10
-
11
-
logger: Logger = get_task_logger(__name__)
12
-
13
-
14
-
@shared_task(
15
-
autoretry_for=(ClientError,), retry_kwargs={"max_retries": 3}, expires=10 * 60
16
-
)
17
-
def generate_discharge_summary_task(encounter_ext_id: str):
18
-
"""
19
-
Generate and Upload the Discharge Summary
20
-
"""
21
-
logger.info("Generating Discharge Summary for %s", encounter_ext_id)
22
-
try:
23
-
encounter = Encounter.objects.get(external_id=encounter_ext_id)
24
-
except Encounter.DoesNotExist as e:
25
-
msg = f"Encounter {encounter_ext_id} does not exist"
26
-
raise CeleryTaskError(msg) from e
27
-
28
-
summary_file = generate_and_upload_discharge_summary(encounter)
29
-
if not summary_file:
30
-
msg = "Unable to generate discharge summary"
31
-
raise CeleryTaskError(msg)
32
-
33
-
return summary_file.id
-68
care/emr/tests/test_encounter_api.py
-68
care/emr/tests/test_encounter_api.py
···
1
1
import uuid
2
2
from datetime import timedelta
3
-
from unittest.mock import patch
4
3
5
4
from django.conf import settings
6
5
from django.urls import reverse
···
635
634
)
636
635
self.assertEqual(response.status_code, 400)
637
636
self.assertIn("Organization does not exist", response.data["errors"][0]["msg"])
638
-
639
-
def test_generate_discharge_summary_with_permissions(self):
640
-
self.patient.year_of_birth = 2000
641
-
self.patient.save()
642
-
role = self.create_role_with_permissions(
643
-
permissions=[
644
-
PatientPermissions.can_view_clinical_data.name,
645
-
]
646
-
)
647
-
self.attach_role_facility_organization_user(
648
-
self.facility_organization, self.user, role
649
-
)
650
-
# 3. Mock the necessary functions to isolate the test
651
-
with (
652
-
patch(
653
-
"care.emr.reports.discharge_summary.get_progress"
654
-
) as mock_get_progress,
655
-
patch("care.emr.reports.discharge_summary.set_lock") as mock_set_lock,
656
-
patch(
657
-
"care.emr.tasks.discharge_summary.generate_discharge_summary_task.delay"
658
-
) as mock_task,
659
-
):
660
-
mock_get_progress.return_value = None
661
-
662
-
path = "generate_discharge_summary"
663
-
url = self._get_detail_url(path)
664
-
response = self.client.post(
665
-
url, {"external_id": str(self.encounter.external_id)}, format="json"
666
-
)
667
-
self.assertEqual(response.status_code, 202)
668
-
self.assertIn(
669
-
"Discharge Summary will be generated shortly", response.data["detail"]
670
-
)
671
-
672
-
mock_get_progress.assert_called_once_with(self.encounter.external_id)
673
-
mock_set_lock.assert_called_once_with(self.encounter.external_id, 1)
674
-
mock_task.assert_called_once_with(self.encounter.external_id)
675
-
676
-
def test_generate_discharge_summary_without_permissions(self):
677
-
path = "generate_discharge_summary"
678
-
url = self._get_detail_url(path)
679
-
response = self.client.post(
680
-
url, {"external_id": str(self.encounter.external_id)}, format="json"
681
-
)
682
-
self.assertEqual(response.status_code, 403)
683
-
self.assertIn("Permission denied to user", response.data["detail"])
684
-
685
-
def test_generate_discharge_summary_with_conflict(self):
686
-
self.patient.year_of_birth = 2000
687
-
self.patient.save()
688
-
self.get_role_with_permissions()
689
-
with patch(
690
-
"care.emr.reports.discharge_summary.get_progress"
691
-
) as mock_get_progress:
692
-
# Return 75% to simulate a discharge summary that's already being generated
693
-
mock_get_progress.return_value = 75
694
-
695
-
path = "generate_discharge_summary"
696
-
url = self._get_detail_url(path)
697
-
response = self.client.post(
698
-
url, {"external_id": str(self.encounter.external_id)}, format="json"
699
-
)
700
-
self.assertEqual(response.status_code, 409)
701
-
self.assertIn(
702
-
"Discharge Summary is already being generated", response.data["detail"]
703
-
)
704
-
self.assertIn("75%", response.data["detail"])
705
637
706
638
# TESTS FOR CARE TEAM MANAGEMENT
707
639
-217
care/templates/reports/patient_discharge_summary_pdf_template.typ
-217
care/templates/reports/patient_discharge_summary_pdf_template.typ
···
1
-
{% load static %}
2
-
{% load data_formatting_extras %}
3
-
{% load discharge_summary_utils %}
4
-
5
-
#set page("a4",margin: 40pt)
6
-
#set text(font: "DejaVu Sans",size: 10pt,hyphenate: true, fallback: true)
7
-
#let mygray = luma(100)
8
-
9
-
#let frame(stroke) = (x, y) => (
10
-
left: if x > 0 { 0pt } else { stroke },
11
-
right: stroke,
12
-
top: if y < 2 { stroke } else { 0pt },
13
-
bottom: stroke,
14
-
)
15
-
16
-
#set table(
17
-
fill: (_, y) => if calc.odd(y) { rgb("EAF2F5") },
18
-
stroke: frame(rgb("21222C")),
19
-
)
20
-
21
-
#let facility_name="{{encounter.facility.name}}"
22
-
23
-
#align(center, text(24pt,weight: "bold")[= #facility_name])
24
-
25
-
#line(length: 100%, stroke: mygray)
26
-
27
-
#grid(
28
-
columns: (auto, 1fr),
29
-
row-gutter: 1em,
30
-
align: (left, right),
31
-
text(size: 15pt)[= {{ encounter.encounter_class|discharge_summary_display }}],
32
-
grid.cell(align: right, rowspan: 2)[#image("{{ logo_path }}", width: 32%)],
33
-
[#text(fill: mygray, weight: 500)[*Created on {{date}}*]]
34
-
)
35
-
36
-
#line(length: 100%, stroke: mygray)
37
-
38
-
#show grid.cell.where(x: 0): set text(fill: mygray,weight: "bold")
39
-
#show grid.cell.where(x: 2): set text(fill: mygray,weight: "bold")
40
-
41
-
#grid(
42
-
columns: (1fr, 1fr, 1fr, 1fr),
43
-
row-gutter: 1.5em,
44
-
[Full name:], "{{patient.name}}",
45
-
[Gender:], "{{patient.gender|field_name_to_label }}",
46
-
[Age:], "{{patient.get_age }}",
47
-
[Blood Group:], "{{patient.blood_group|field_name_to_label }}",
48
-
[Phone Number:], "{{patient.phone_number }}",
49
-
[Ration Card Category:], "{{patient.get_ration_card_category_display|format_empty_data }}",
50
-
[Address:], grid.cell(colspan: 3, "{{patient.address }}"),
51
-
)
52
-
53
-
#line(length: 100%, stroke: mygray)
54
-
55
-
#align(left, text(18pt)[== Visit Details])
56
-
#text("")
57
-
#grid(
58
-
columns: (1.1fr, 2fr),
59
-
row-gutter: 1.2em,
60
-
align: (left),
61
-
[Route to Facility:], "{{ encounter.hospitalization.admit_source|admit_source_display }}",
62
-
{% if encounter.encounter_class == "imp" %}
63
-
[Admitted To:], "{{ encounter.facility.name|format_empty_data }}", // TODO: show bed info instead of facility name
64
-
[Duration of Admission:], "{{admission_duration|format_empty_data}}",
65
-
[Date of admission:], "{{ encounter.period.start|parse_iso_datetime|format_empty_data }}",
66
-
[IP No:], "{{ encounter.external_identifier }}",
67
-
{% else %}
68
-
[OP No:], "{{ encounter.external_identifier }}",
69
-
{% endif %}
70
-
[Diagnosis:],[#stack(
71
-
dir: ttb,
72
-
spacing: 10pt,
73
-
{% for diagnose in diagnoses %}
74
-
"{{ diagnose.code.display }} ({{diagnose.verification_status }})",
75
-
{% endfor %}
76
-
)],
77
-
[Principal Diagnosis:],
78
-
{% if principal_diagnosis %}
79
-
"{{ principal_diagnosis.code.display }}",
80
-
{% else %}
81
-
"N/A",
82
-
{% endif %}
83
-
[Symptoms:], [#stack(
84
-
dir: ttb,
85
-
spacing: 10pt,
86
-
{% if symptoms %}
87
-
{% for symptom in symptoms %}
88
-
"{{ symptom.code.display }}",
89
-
{% endfor %}
90
-
{% else %}
91
-
"Asymptomatic"
92
-
{% endif %}
93
-
)],
94
-
[Reported Allergies:],
95
-
{% if allergies %}
96
-
[#stack(
97
-
dir: ttb,
98
-
spacing: 10pt,
99
-
{% for allergy in allergies %}
100
-
"{{ allergy.code.display }}",
101
-
{% endfor %}
102
-
)],
103
-
{% else %}
104
-
"N/A",
105
-
{% endif %}
106
-
)
107
-
108
-
#text("")
109
-
110
-
#align(center, [#line(length: 40%, stroke: mygray)])
111
-
112
-
// TODO: add comorbidity info
113
-
114
-
{% if medication_requests %}
115
-
#align(left, text(14pt,weight: "bold",)[=== Medication Requests:])
116
-
#table(
117
-
columns: (1fr,),
118
-
inset: 10pt,
119
-
align: horizon,
120
-
stroke: 1pt,
121
-
table.header(
122
-
align(center, text([*MEDICATION REQUESTS*]))
123
-
),
124
-
{% for medication in medication_requests %}
125
-
[#grid(
126
-
columns: (1fr, 3fr),
127
-
row-gutter: 1.2em,
128
-
align: (left),
129
-
[Name:], "{{ medication.medication.display }}",
130
-
[Dosage:], "{{ medication|medication_dosage_display|format_empty_data }}",
131
-
{% if medication.created_by %}
132
-
[Prescribed By:], "{{ medication.created_by.full_name|default:medication.created_by.username }}",
133
-
{% else %}
134
-
[Prescribed By:], "Unknown",
135
-
{% endif %}
136
-
[Date:], "{{ medication.authored_on|default:medication.created_date }}",
137
-
[Intent:], "{{ medication.intent|title }}",
138
-
[Priority:], "{{ medication.priority|title }}",
139
-
{% if medication.status_reason %}
140
-
[Status Reason:], "{{ medication.status_reason|title }}",
141
-
{% endif %}
142
-
[Status:], "{{ medication.status|title }}",
143
-
)],
144
-
{% endfor %}
145
-
)
146
-
147
-
#align(center, [#line(length: 40%, stroke: mygray)])
148
-
149
-
{% endif %}
150
-
151
-
152
-
{% if observations %}
153
-
#align(left, text(14pt,weight: "bold")[=== Observations:])
154
-
#table(
155
-
columns: (1fr,),
156
-
inset: 10pt,
157
-
align: horizon,
158
-
stroke: 1pt,
159
-
table.header(
160
-
align(center, text([*OBSERVATION DETAILS*]))
161
-
),
162
-
{% for observation in observations %}
163
-
{% if observation.main_code.display and observation|observation_value_display %}
164
-
[#grid(
165
-
columns: (1fr, 3fr),
166
-
row-gutter: 1.2em,
167
-
align: (left),
168
-
[Name:], "{{ observation.main_code.display }}",
169
-
[Value:], "{{ observation|observation_value_display|field_name_to_label|format_empty_data }}",
170
-
{% if observation.body_site %}
171
-
[Body Site:], "{{ observation.body_site.display }}",
172
-
{% endif %}
173
-
[Date:], "{{ observation.effective_datetime }}",
174
-
{% if observation.data_entered_by %}
175
-
[Data Entered By:], "{{ observation.data_entered_by.full_name|default:observation.data_entered_by.username }}",
176
-
{% endif %}
177
-
{% if observation.note %}
178
-
[Note:], "{{ observation.note }}",
179
-
{% endif %}
180
-
)],
181
-
{% endif %}
182
-
{% endfor %}
183
-
)
184
-
185
-
#align(center, [#line(length: 40%, stroke: mygray)])
186
-
{% endif %}
187
-
188
-
189
-
{% if encounter.hospitalization and encounter.hospitalization.discharge_disposition %}
190
-
#align(left, text(18pt,)[== Discharge Summary])
191
-
#grid(
192
-
columns: (1fr,3fr),
193
-
row-gutter: 1.2em,
194
-
align: (left),
195
-
[Discharge Date:], "{{ encounter.period.end|parse_iso_datetime|format_empty_data }}",
196
-
[Discharge Disposition:], "{{ encounter.hospitalization.discharge_disposition|discharge_disposition_display }}",
197
-
)
198
-
199
-
#align(center, [#line(length: 40%, stroke: mygray)])
200
-
{% endif %}
201
-
202
-
203
-
#align(right)[#text(12pt,fill: mygray)[*Care Team* :] #text(10pt,weight: "bold")[{% if care_team %}
204
-
{% for member in care_team %}
205
-
{{ member }}
206
-
{% endfor %}
207
-
{% else %}
208
-
-
209
-
{% endif %}]]
210
-
211
-
#text("")
212
-
#line(length: 100%, stroke: mygray)
213
-
#text("")
214
-
{% if discharge_summary_advice %}
215
-
= Discharge Summary Advice
216
-
#`{{ discharge_summary_advice }}`.text
217
-
{% endif %}
-3
config/settings/base.py
-3
config/settings/base.py
···
685
685
"SNOWSTORM_DEPLOYMENT_URL", default="http://165.22.211.144/fhir"
686
686
)
687
687
688
-
# Path to the typst binary, see scripts/install_typst.sh
689
-
TYPST_BIN = env("TYPST_BIN", default="typst")
690
-
691
688
DJANGO_REST_MULTITOKENAUTH_REQUIRE_USABLE_PASSWORD = False
692
689
693
690
SMS_BACKEND = "care.utils.sms.backend.sns.SnsBackend"
-5
config/urls.py
-5
config/urls.py
···
10
10
SpectacularSwaggerView,
11
11
)
12
12
13
-
from care.emr.api.viewsets.encounter import dev_preview_discharge_summary
14
13
from care.users.api.viewsets.change_password import ChangePasswordView
15
14
from care.users.reset_password_views import (
16
15
ResetPasswordCheck,
···
87
86
kwargs={"exception": Exception("Page not Found")},
88
87
),
89
88
path("500/", default_views.server_error),
90
-
path(
91
-
"preview_discharge_summary/<str:encounter_id>/",
92
-
dev_preview_discharge_summary,
93
-
),
94
89
]
95
90
if "debug_toolbar" in settings.INSTALLED_APPS:
96
91
urlpatterns += [path("__debug__/", include("debug_toolbar.urls"))]
-4
docker/dev.Dockerfile
-4
docker/dev.Dockerfile
···
1
1
FROM python:3.13-slim-bookworm
2
2
3
3
ARG APP_HOME=/app
4
-
ARG TYPST_VERSION=0.12.0
5
4
6
5
WORKDIR $APP_HOME
7
6
···
13
12
libharfbuzz0b libharfbuzz-subset0 libffi-dev libjpeg-dev libopenjp2-7-dev \
14
13
&& apt-get purge -y --auto-remove -o APT::AutoRemove::RecommendsImportant=false \
15
14
&& rm -rf /var/lib/apt/lists/*
16
-
17
-
COPY --chmod=0755 scripts/install_typst.sh $APP_HOME
18
-
RUN TYPST_VERSION=${TYPST_VERSION} $APP_HOME/install_typst.sh
19
15
20
16
# use pipenv to manage virtualenv
21
17
ENV PATH=/.venv/bin:$PATH
-6
docker/prod.Dockerfile
-6
docker/prod.Dockerfile
···
1
1
FROM python:3.13-slim-bookworm AS base
2
2
3
3
ARG APP_HOME=/app
4
-
ARG TYPST_VERSION=0.12.0
5
4
6
5
ARG BUILD_ENVIRONMENT="production"
7
6
···
25
24
&& apt-get purge -y --auto-remove -o APT::AutoRemove::RecommendsImportant=false \
26
25
&& rm -rf /var/lib/apt/lists/*
27
26
28
-
COPY --chmod=0755 scripts/install_typst.sh $APP_HOME
29
-
RUN TYPST_VERSION=${TYPST_VERSION} $APP_HOME/install_typst.sh
30
-
31
27
# use pipenv to manage virtualenv
32
28
RUN pip install pipenv==2025.1.1
33
29
···
54
50
&& rm -rf /var/lib/apt/lists/*
55
51
56
52
RUN chown django:django $APP_HOME
57
-
58
-
COPY --from=builder --chmod=0755 /usr/local/bin/typst /usr/local/bin/typst
59
53
60
54
COPY --from=builder --chown=django:django $APP_HOME/.venv $APP_HOME/.venv
61
55
-1
docs/development/nix-development.md
-1
docs/development/nix-development.md
···
386
386
- **PostgreSQL 15**: Database server and client tools
387
387
- **Redis**: In-memory data structure store
388
388
- **MinIO**: S3-compatible object storage
389
-
- **Typst**: Modern typesetting system
390
389
- **Pre-commit**: Git hook framework
391
390
- **GCC & build tools**: For compiling Python packages
392
391
+1
-5
flake.nix
+1
-5
flake.nix
···
239
239
240
240
echo "✅ Development environment setup complete!"
241
241
echo ""
242
-
echo "Note: Typst ${pkgs.typst.version} and ruff ${pkgs.ruff.version} are available from Nix store"
242
+
echo "Note: ruff ${pkgs.ruff.version} is available from Nix store"
243
243
'';
244
244
245
245
# Django management commands
···
429
429
libpq
430
430
redis
431
431
minio
432
-
typst # Typst directly from nixpkgs
433
432
ruff # Ruff from Nix for NixOS compatibility
434
433
435
434
# System dependencies for building Python packages
···
496
495
echo " PostgreSQL: ${pkgs.postgresql_15.version}"
497
496
echo " Redis: ${pkgs.redis.version}"
498
497
echo " MinIO: ${pkgs.minio.version}"
499
-
echo " Typst: ${pkgs.typst.version}"
500
498
echo " Ruff: ${pkgs.ruff.version}"
501
499
echo ""
502
500
echo "Available commands:"
···
542
540
543
541
# Verify tools are available
544
542
echo "✅ PostgreSQL development tools available (${pkgs.postgresql_15.version})"
545
-
echo "✅ Typst available (${pkgs.typst.version})"
546
543
echo "✅ Ruff available (${pkgs.ruff.version})"
547
544
'';
548
545
};
···
555
552
pkgs.postgresql_15
556
553
pkgs.redis
557
554
pkgs.minio
558
-
pkgs.typst
559
555
pkgs.ruff
560
556
];
561
557
text = ''
-85
scripts/install_typst.sh
-85
scripts/install_typst.sh
···
1
-
#!/bin/sh
2
-
3
-
# This script installs Typst binary based on the given version and path
4
-
# Supported platforms: Linux(x86_64, aarch64), Darwin(x86_64, arm64)
5
-
#
6
-
# Environment variables:
7
-
# TYPST_VERSION: The version of Typst to install
8
-
# TYPST_INSTALL_DIR: The directory to install Typst to. Defaults to /usr/local/bin
9
-
#
10
-
# Example usage:
11
-
# TYPST_VERSION=0.12.0 ./scripts/install_typst.sh
12
-
# TYPST_VERSION=0.12.0 TYPST_INSTALL_DIR=./bin ./scripts/install_typst.sh
13
-
14
-
15
-
INSTALL_PATH="${TYPST_INSTALL_DIR:-/usr/local/bin}"
16
-
17
-
if [ -z "${TYPST_VERSION}" ]; then
18
-
echo "TYPST_VERSION is not set. Exiting."
19
-
exit 1
20
-
fi
21
-
22
-
if ! command -v wget >/dev/null 2>&1; then
23
-
echo "wget is required but not installed. Exiting."
24
-
exit 1
25
-
fi
26
-
27
-
if ! command -v tar >/dev/null 2>&1; then
28
-
echo "tar is required but not installed. Exiting."
29
-
exit 1
30
-
fi
31
-
32
-
33
-
get_arch() {
34
-
OS=$(uname -s)
35
-
MACHINE=$(uname -m)
36
-
case "$OS" in
37
-
Darwin)
38
-
case "$MACHINE" in
39
-
x86_64)
40
-
echo "x86_64-apple-darwin"
41
-
;;
42
-
arm64)
43
-
echo "aarch64-apple-darwin"
44
-
;;
45
-
*)
46
-
echo "Unsupported architecture: $MACHINE on Darwin" >&2
47
-
exit 1
48
-
;;
49
-
esac
50
-
;;
51
-
Linux)
52
-
case "$MACHINE" in
53
-
x86_64|amd64)
54
-
echo "x86_64-unknown-linux-musl"
55
-
;;
56
-
arm64|aarch64)
57
-
echo "aarch64-unknown-linux-musl"
58
-
;;
59
-
*)
60
-
echo "Unsupported architecture: $MACHINE on Linux" >&2
61
-
exit 1
62
-
;;
63
-
esac
64
-
;;
65
-
*)
66
-
echo "Unsupported OS: $OS" >&2
67
-
exit 1
68
-
;;
69
-
esac
70
-
}
71
-
72
-
TYPST_ARCH=$(get_arch)
73
-
74
-
wget -qO typst.tar.xz \
75
-
"https://github.com/typst/typst/releases/download/v${TYPST_VERSION}/typst-${TYPST_ARCH}.tar.xz"
76
-
77
-
tar -xf typst.tar.xz
78
-
79
-
mkdir -p "${INSTALL_PATH}"
80
-
mv "typst-${TYPST_ARCH}/typst" "${INSTALL_PATH}/typst"
81
-
chmod +x "${INSTALL_PATH}/typst"
82
-
83
-
rm -rf "typst.tar.xz" "typst-${TYPST_ARCH}"
84
-
85
-
echo "Typst v${TYPST_VERSION} has been installed to ${INSTALL_PATH}/typst"